PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_EB10DBA07.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 155aa    MW: 17611.5 Da    PI: 8.1942
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_EB10DBA07.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.82.6e-1166152180
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                            +fYn Y+ e+GF vr +ks+ + +  +  +++ vC +   + +             +  r+++ +tr+gC+a++++ +++d+ w++++
  Traes_7DS_EB10DBA07.2  66 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAVDPVRLAAFllvvlslqGKPLRENSRSTRCGCNAMIRLLRSNDKGWYIAE 152
                            6*****************9999554.478899*****999988877799***998888999*************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-866152IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLMCSQCIFL GWIAVRVGKA PEEREMNPNM ISALELSVRA YAEKRDGTVV YPSIGTSFDS  60
LDEAYEFYNL YSWECGFGVR LAKSRLNVER KRCMQEIVCA CAVDPVRLAA FLLVVLSLQG  120
KPLRENSRST RCGCNAMIRL LRSNDKGWYI AEHKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233160.16e-60PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014753620.13e-58PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5IBW61e-113W5IBW6_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.11e-57(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-10FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]